IL_4CXE_154

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_154 not in the Motif Atlas

Geometric match to IL_8P9A_333

Geometric discrepancy: 0.1771

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4CXE|1|2|C|4372
4CXE|1|2|C|4373
4CXE|1|2|A|4374
4CXE|1|2|A|4375
4CXE|1|2|G|4376
*
4CXE|1|2|C|4386
4CXE|1|2|G|4387
4CXE|1|2|A|4388
4CXE|1|2|C|4389
4CXE|1|2|G|4390

Current chains

Chain 2

28S RRNA

Nearby chains