IL_4CXE_165

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

4CXE|1|2|G|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_165 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.2596

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26290.1

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4CXE|1|2|C|4556
4CXE|1|2|U|4557
4CXE|1|2|C|4558
4CXE|1|2|A|4559
4CXE|1|2|G|4560
4CXE|1|2|U|4561
4CXE|1|2|A|4562
4CXE|1|2|C|4563
*
4CXE|1|2|G|4568
4CXE|1|2|G|4569
4CXE|1|2|A|4570
4CXE|1|2|A|4571
4CXE|1|2|C|4572
4CXE|1|2|C|4573
4CXE|1|2|G|4574

Current chains

Chain 2

28S RRNA

Nearby chains