IL_4CXE_186

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_186 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.1799

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

7

Unit IDs

4CXE|1|2|G|4947
4CXE|1|2|G|4948
4CXE|1|2|G|4949
*
4CXE|1|2|C|5012
4CXE|1|2|A|5013
4CXE|1|2|C|5014

Current chains

Chain 2

28S RRNA

Nearby chains