IL_4CXE_205

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAAUUU*AUUAGUCA

Length

15 nucleotides

Bulged bases

4CXE|1|2|G|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_205 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.284

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4CXE|1|2|U|31
4CXE|1|2|G|32
4CXE|1|2|A|33
4CXE|1|2|A|34
4CXE|1|2|U|35
4CXE|1|2|U|36
4CXE|1|2|U|37
*
4CXE|1|2|A|44
4CXE|1|2|U|45
4CXE|1|2|U|46
4CXE|1|2|A|47
4CXE|1|2|G|48
4CXE|1|2|U|49
4CXE|1|2|C|50
4CXE|1|2|A|51

Current chains

Chain 2

28S RRNA

Nearby chains