IL_4CXE_241

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

4CXE|1|2|G|5004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_241 not in the Motif Atlas

Geometric match to IL_8CRE_138

Geometric discrepancy: 0.1557

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4CXE|1|2|G|4955
4CXE|1|2|U|4956
4CXE|1|2|U|4957
*
4CXE|1|2|G|5000
4CXE|1|2|U|5001
4CXE|1|2|C|5002
4CXE|1|2|A|5003
4CXE|1|2|G|5004
4CXE|1|2|C|5005

Current chains

Chain 2

28S RRNA

Nearby chains