IL_4D5L_010
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAUAAC*GCUAAUAC
- Length
- 14 nucleotides
- Bulged bases
- 4D5L|1|1|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_010 not in the Motif Atlas
- Homologous match to IL_9PN5_152
- Geometric discrepancy: 0.548
- The information below is about IL_9PN5_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29461.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4D5L|1|1|G|146
4D5L|1|1|A|147
4D5L|1|1|U|148
4D5L|1|1|A|149
4D5L|1|1|A|150
4D5L|1|1|C|151
*
4D5L|1|1|G|167
4D5L|1|1|C|168
4D5L|1|1|U|169
4D5L|1|1|A|170
4D5L|1|1|A|171
4D5L|1|1|U|172
4D5L|1|1|A|173
4D5L|1|1|C|174
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN RACK1
- Chain Y
- 40S RIBOSOMAL PROTEIN ES24
Coloring options: