IL_4D5L_025
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 4D5L|1|1|G|606
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_025 not in the Motif Atlas
- Geometric match to IL_4V88_470
- Geometric discrepancy: 0.1841
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4D5L|1|1|A|599
4D5L|1|1|G|600
4D5L|1|1|G|601
4D5L|1|1|G|602
4D5L|1|1|C|603
4D5L|1|1|A|604
4D5L|1|1|A|605
4D5L|1|1|G|606
4D5L|1|1|U|607
4D5L|1|1|C|608
*
4D5L|1|1|G|635
4D5L|1|1|C|636
4D5L|1|1|U|637
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN ES28
- Chain J
- 40S RIBOSOMAL PROTEIN US4
- Chain X
- 40S RIBOSOMAL PROTEIN US12
- Chain e
- 40S RIBOSOMAL PROTEIN ES4
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