IL_4D5L_042

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5L_042 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.2331

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4D5L|1|1|A|1042
4D5L|1|1|G|1043
4D5L|1|1|G|1044
4D5L|1|1|U|1045
4D5L|1|1|U|1046
4D5L|1|1|C|1047
*
4D5L|1|1|G|1071
4D5L|1|1|U|1072
4D5L|1|1|U|1073

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain O

40S RIBOSOMAL PROTEIN US11