IL_4D5L_052

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5L_052 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.2529

The information below is about IL_4V88_444

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

4D5L|1|1|C|1230
4D5L|1|1|C|1231
4D5L|1|1|U|1232
*
4D5L|1|1|G|1526
4D5L|1|1|C|1527
4D5L|1|1|G|1528

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain Q

40S RIBOSOMAL PROTEIN US9

Chain S

40S RIBOSOMAL PROTEIN US13

Chain T

40S RIBOSOMAL PROTEIN ES19