3D structure

PDB id
4D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
4D5L|1|1|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4D5L|1|1|G|1281
4D5L|1|1|A|1282
4D5L|1|1|C|1283
4D5L|1|1|A|1284
4D5L|1|1|G|1285
4D5L|1|1|G|1286
4D5L|1|1|A|1287
4D5L|1|1|U|1288
4D5L|1|1|U|1289
4D5L|1|1|G|1290
*
4D5L|1|1|C|1309
4D5L|1|1|U|1310
4D5L|1|1|C|1311
4D5L|1|1|G|1312
4D5L|1|1|A|1313
4D5L|1|1|U|1314
4D5L|1|1|U|1315
4D5L|1|1|C|1316

Current chains

Chain 1
18S RRNA 2

Nearby chains

Chain K
40S RIBOSOMAL PROTEIN ES10
Chain M
40S RIBOSOMAL PROTEIN ES12
Chain d
40S RIBOSOMAL PROTEIN US3
Chain f
40S RIBOSOMAL PROTEIN US7

Coloring options:

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