IL_4D5L_055
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 4D5L|1|1|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|G|1281
4D5L|1|1|A|1282
4D5L|1|1|C|1283
4D5L|1|1|A|1284
4D5L|1|1|G|1285
4D5L|1|1|G|1286
4D5L|1|1|A|1287
4D5L|1|1|U|1288
4D5L|1|1|U|1289
4D5L|1|1|G|1290
*
4D5L|1|1|C|1309
4D5L|1|1|U|1310
4D5L|1|1|C|1311
4D5L|1|1|G|1312
4D5L|1|1|A|1313
4D5L|1|1|U|1314
4D5L|1|1|U|1315
4D5L|1|1|C|1316
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain K
- 40S RIBOSOMAL PROTEIN ES10
- Chain M
- 40S RIBOSOMAL PROTEIN ES12
- Chain d
- 40S RIBOSOMAL PROTEIN US3
- Chain f
- 40S RIBOSOMAL PROTEIN US7
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