IL_4D5L_067
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_067 not in the Motif Atlas
- Geometric match to IL_6OL3_002
- Geometric discrepancy: 0.1856
- The information below is about IL_6OL3_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4D5L|1|1|A|1537
4D5L|1|1|C|1538
4D5L|1|1|U|1539
*
4D5L|1|1|A|1594
4D5L|1|1|U|1595
4D5L|1|1|U|1596
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN ES31
- Chain Q
- 40S RIBOSOMAL PROTEIN US9
- Chain S
- 40S RIBOSOMAL PROTEIN US13
- Chain T
- 40S RIBOSOMAL PROTEIN ES19
- Chain Z
- 40S RIBOSOMAL PROTEIN ES25
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