IL_4D5L_068
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 4D5L|1|1|C|1554, 4D5L|1|1|A|1579, 4D5L|1|1|A|1580, 4D5L|1|1|C|1581
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|G|1550
4D5L|1|1|U|1551
4D5L|1|1|G|1552
4D5L|1|1|C|1553
4D5L|1|1|C|1554
4D5L|1|1|U|1555
4D5L|1|1|A|1556
4D5L|1|1|C|1557
4D5L|1|1|C|1558
*
4D5L|1|1|G|1577
4D5L|1|1|U|1578
4D5L|1|1|A|1579
4D5L|1|1|A|1580
4D5L|1|1|C|1581
4D5L|1|1|C|1582
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN US14
- Chain K
- 40S RIBOSOMAL PROTEIN ES10
- Chain T
- 40S RIBOSOMAL PROTEIN ES19
- Chain U
- 40S RIBOSOMAL PROTEIN US10
- Chain d
- 40S RIBOSOMAL PROTEIN US3
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