IL_4D5L_089

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAAGGGC*GCCCUUU

Length

15 nucleotides

Bulged bases

4D5L|1|1|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5L|1|1|G|1206
4D5L|1|1|G|1207
4D5L|1|1|A|1208
4D5L|1|1|A|1209
4D5L|1|1|G|1210
4D5L|1|1|G|1211
4D5L|1|1|G|1212
4D5L|1|1|C|1213
*
4D5L|1|1|G|1686
4D5L|1|1|C|1687
4D5L|1|1|C|1688
4D5L|1|1|C|1689
4D5L|1|1|U|1690
4D5L|1|1|U|1691
4D5L|1|1|U|1692

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain C

40S RIBOSOMAL PROTEIN ES28

Chain Q

40S RIBOSOMAL PROTEIN US9

Chain a

40S RIBOSOMAL PROTEIN US2

Chain c

40S RIBOSOMAL PROTEIN US5