IL_4D5L_098
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 4D5L|1|1|U|1543, 4D5L|1|1|U|1585, 4D5L|1|1|U|1586, 4D5L|1|1|G|1587
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|G|1541
4D5L|1|1|C|1542
4D5L|1|1|U|1543
4D5L|1|1|C|1544
4D5L|1|1|A|1545
4D5L|1|1|G|1546
4D5L|1|1|C|1547
4D5L|1|1|G|1548
4D5L|1|1|U|1549
4D5L|1|1|G|1550
*
4D5L|1|1|C|1582
4D5L|1|1|C|1583
4D5L|1|1|G|1584
4D5L|1|1|U|1585
4D5L|1|1|U|1586
4D5L|1|1|G|1587
4D5L|1|1|A|1588
4D5L|1|1|A|1589
4D5L|1|1|C|1590
4D5L|1|1|C|1591
4D5L|1|1|C|1592
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN US14
- Chain F
- 40S RIBOSOMAL PROTEIN ES31
- Chain Q
- 40S RIBOSOMAL PROTEIN US9
- Chain T
- 40S RIBOSOMAL PROTEIN ES19
- Chain U
- 40S RIBOSOMAL PROTEIN US10
- Chain Z
- 40S RIBOSOMAL PROTEIN ES25
- Chain d
- 40S RIBOSOMAL PROTEIN US3
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