IL_4D5L_101

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGCCC*GAGCGCU

Length

12 nucleotides

Bulged bases

4D5L|1|1|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5L_101 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.3163

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4D5L|1|1|G|1748
4D5L|1|1|G|1749
4D5L|1|1|C|1750
4D5L|1|1|C|1751
4D5L|1|1|C|1752
*
4D5L|1|1|G|1780
4D5L|1|1|A|1781
4D5L|1|1|G|1782
4D5L|1|1|C|1783
4D5L|1|1|G|1784
4D5L|1|1|C|1785
4D5L|1|1|U|1786

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN RACK1