IL_4D5Y_003
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GACG*CGCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_003 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.259
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
4D5Y|1|2|G|16
4D5Y|1|2|A|17
4D5Y|1|2|C|18
4D5Y|1|2|G|19
*
4D5Y|1|3|C|138
4D5Y|1|3|G|139
4D5Y|1|3|C|140
4D5Y|1|3|C|141
Current chains
- Chain 2
- 28S Ribosomal RNA
- Chain 3
- 5.8S Ribosomal RNA
Nearby chains
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain X
- 60S RIBOSOMAL PROTEIN UL23
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
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