IL_4D5Y_023

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAAGGCC*GCAGCAGCAC

Length

18 nucleotides

Bulged bases

4D5Y|1|2|C|912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|G|718
4D5Y|1|2|G|719
4D5Y|1|2|A|720
4D5Y|1|2|A|721
4D5Y|1|2|G|722
4D5Y|1|2|G|723
4D5Y|1|2|C|724
4D5Y|1|2|C|725
*
4D5Y|1|2|G|911
4D5Y|1|2|C|912
4D5Y|1|2|A|913
4D5Y|1|2|G|914
4D5Y|1|2|C|915
4D5Y|1|2|A|916
4D5Y|1|2|G|917
4D5Y|1|2|C|918
4D5Y|1|2|A|919
4D5Y|1|2|C|920

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN UL4

Chain F

60S RIBOSOMAL PROTEIN UL30

Chain M

60S RIBOSOMAL PROTEIN EL14

Chain S

60S RIBOSOMAL PROTEIN EL20