IL_4D5Y_039

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4D5Y|1|2|A|1476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_039 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.4409

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4D5Y|1|2|C|1446
4D5Y|1|2|C|1447
*
4D5Y|1|2|G|1475
4D5Y|1|2|A|1476
4D5Y|1|2|G|1477

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain Q

60S RIBOSOMAL PROTEIN EL18

Chain a

60S RIBOSOMAL PROTEIN UL15