IL_4D5Y_043
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GCGAAG*UGGAGGU
- Length
- 13 nucleotides
- Bulged bases
- 4D5Y|1|2|G|1556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_043 not in the Motif Atlas
- Geometric match to IL_4V88_462
- Geometric discrepancy: 0.2777
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4D5Y|1|2|G|1529
4D5Y|1|2|C|1530
4D5Y|1|2|G|1531
4D5Y|1|2|A|1532
4D5Y|1|2|A|1533
4D5Y|1|2|G|1534
*
4D5Y|1|2|U|1551
4D5Y|1|2|G|1552
4D5Y|1|2|G|1553
4D5Y|1|2|A|1554
4D5Y|1|2|G|1555
4D5Y|1|2|G|1556
4D5Y|1|2|U|1557
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN UL2
- Chain R
- 60S RIBOSOMAL PROTEIN UL19
- Chain p
- 60S RIBOSOMAL PROTEIN EL43
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