IL_4D5Y_046
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4D5Y|1|2|G|1604, 4D5Y|1|2|A|1616, 4D5Y|1|2|A|1617, 4D5Y|1|2|U|1618
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_046 not in the Motif Atlas
- Geometric match to IL_7A0S_021
- Geometric discrepancy: 0.2106
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
4D5Y|1|2|G|1603
4D5Y|1|2|G|1604
4D5Y|1|2|G|1605
*
4D5Y|1|2|U|1615
4D5Y|1|2|A|1616
4D5Y|1|2|A|1617
4D5Y|1|2|U|1618
4D5Y|1|2|C|1619
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN UL2
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain P
- 60S RIBOSOMAL PROTEIN UL22
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
Coloring options: