IL_4D5Y_061
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_061 not in the Motif Atlas
- Geometric match to IL_5Y85_006
- Geometric discrepancy: 0.2517
- The information below is about IL_5Y85_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
4D5Y|1|2|C|1889
4D5Y|1|2|G|1890
4D5Y|1|2|C|1891
4D5Y|1|2|C|1892
4D5Y|1|2|C|1893
4D5Y|1|2|G|1894
4D5Y|1|2|A|1895
4D5Y|1|2|U|1896
4D5Y|1|2|G|1897
4D5Y|1|2|C|1898
*
4D5Y|1|2|G|2041
4D5Y|1|2|G|2042
4D5Y|1|2|G|2043
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain O
- 60S RIBOSOMAL PROTEIN UL13
- Chain S
- 60S RIBOSOMAL PROTEIN EL20
- Chain f
- 60S RIBOSOMAL PROTEIN EL33
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