IL_4D5Y_108

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGGUGUAGAAUAA*UACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|A|3923
4D5Y|1|2|G|3924
4D5Y|1|2|G|3925
4D5Y|1|2|U|3926
4D5Y|1|2|G|3927
4D5Y|1|2|U|3928
4D5Y|1|2|A|3929
4D5Y|1|2|G|3930
4D5Y|1|2|A|3931
4D5Y|1|2|A|3932
4D5Y|1|2|U|3933
4D5Y|1|2|A|3934
4D5Y|1|2|A|3935
*
4D5Y|1|2|U|4023
4D5Y|1|2|A|4024
4D5Y|1|2|C|4025
4D5Y|1|2|U|4026

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain i

60S RIBOSOMAL PROTEIN EL36

Chain u

60S RIBOSOMAL PROTEIN UL1