IL_4D5Y_149

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

4D5Y|1|2|C|4968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_149 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.3488

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4D5Y|1|2|G|4967
4D5Y|1|2|C|4968
4D5Y|1|2|A|4969
*
4D5Y|1|2|U|4990
4D5Y|1|2|C|4991

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain W

60S RIBOSOMAL PROTEIN EL24