IL_4D5Y_152
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 4D5Y|1|3|U|89
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_152 not in the Motif Atlas
- Geometric match to IL_5TBW_146
- Geometric discrepancy: 0.1476
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4D5Y|1|3|G|68
4D5Y|1|3|U|69
*
4D5Y|1|3|A|88
4D5Y|1|3|U|89
4D5Y|1|3|C|90
Current chains
- Chain 3
- 5.8S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S RIBOSOMAL PROTEIN UL24
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
- Chain l
- 60S RIBOSOMAL PROTEIN EL39
Coloring options: