IL_4D5Y_160
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGAAUUU*AUUAGUCA
- Length
- 15 nucleotides
- Bulged bases
- 4D5Y|1|2|G|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_160 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2839
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4D5Y|1|2|U|31
4D5Y|1|2|G|32
4D5Y|1|2|A|33
4D5Y|1|2|A|34
4D5Y|1|2|U|35
4D5Y|1|2|U|36
4D5Y|1|2|U|37
*
4D5Y|1|2|A|44
4D5Y|1|2|U|45
4D5Y|1|2|U|46
4D5Y|1|2|A|47
4D5Y|1|2|G|48
4D5Y|1|2|U|49
4D5Y|1|2|C|50
4D5Y|1|2|A|51
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
- Chain o
- 60S RIBOSOMAL PROTEIN EL44
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