IL_4D5Y_161

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCCGCUCCCCGGCGCCG*CGCGCGCCCGGG

Length

29 nucleotides

Bulged bases

4D5Y|1|2|G|254, 4D5Y|1|2|C|257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|C|163
4D5Y|1|2|C|164
4D5Y|1|2|C|165
4D5Y|1|2|G|166
4D5Y|1|2|C|167
4D5Y|1|2|U|168
4D5Y|1|2|C|169
4D5Y|1|2|C|170
4D5Y|1|2|C|171
4D5Y|1|2|C|172
4D5Y|1|2|G|173
4D5Y|1|2|G|174
4D5Y|1|2|C|175
4D5Y|1|2|G|176
4D5Y|1|2|C|177
4D5Y|1|2|C|178
4D5Y|1|2|G|179
*
4D5Y|1|2|C|249
4D5Y|1|2|G|250
4D5Y|1|2|C|251
4D5Y|1|2|G|252
4D5Y|1|2|C|253
4D5Y|1|2|G|254
4D5Y|1|2|C|255
4D5Y|1|2|C|256
4D5Y|1|2|C|257
4D5Y|1|2|G|258
4D5Y|1|2|G|259
4D5Y|1|2|G|260

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN EL13

Chain h

60S RIBOSOMAL PROTEIN UL29