IL_4D5Y_164

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAUUCAACCCG*CGGGCGCAUU

Length

22 nucleotides

Bulged bases

4D5Y|1|2|U|459, 4D5Y|1|2|C|460, 4D5Y|1|2|A|461, 4D5Y|1|2|A|462, 4D5Y|1|2|C|675, 4D5Y|1|2|G|676, 4D5Y|1|2|C|677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|G|455
4D5Y|1|2|G|456
4D5Y|1|2|A|457
4D5Y|1|2|U|458
4D5Y|1|2|U|459
4D5Y|1|2|C|460
4D5Y|1|2|A|461
4D5Y|1|2|A|462
4D5Y|1|2|C|463
4D5Y|1|2|C|464
4D5Y|1|2|C|465
4D5Y|1|2|G|466
*
4D5Y|1|2|C|671
4D5Y|1|2|G|672
4D5Y|1|2|G|673
4D5Y|1|2|G|674
4D5Y|1|2|C|675
4D5Y|1|2|G|676
4D5Y|1|2|C|677
4D5Y|1|2|A|678
4D5Y|1|2|U|679
4D5Y|1|2|U|680

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain t

60S RIBOSOMAL PROTEIN EL28