IL_4D5Y_167
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGGACGGCUGG*CUCGCCGAAUCCC
- Length
- 24 nucleotides
- Bulged bases
- 4D5Y|1|2|A|927
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|G|708
4D5Y|1|2|G|709
4D5Y|1|2|G|710
4D5Y|1|2|A|711
4D5Y|1|2|C|712
4D5Y|1|2|G|713
4D5Y|1|2|G|714
4D5Y|1|2|C|715
4D5Y|1|2|U|716
4D5Y|1|2|G|717
4D5Y|1|2|G|718
*
4D5Y|1|2|C|920
4D5Y|1|2|U|921
4D5Y|1|2|C|922
4D5Y|1|2|G|923
4D5Y|1|2|C|924
4D5Y|1|2|C|925
4D5Y|1|2|G|926
4D5Y|1|2|A|927
4D5Y|1|2|A|928
4D5Y|1|2|U|929
4D5Y|1|2|C|930
4D5Y|1|2|C|931
4D5Y|1|2|C|932
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain M
- 60S RIBOSOMAL PROTEIN EL14
- Chain S
- 60S RIBOSOMAL PROTEIN EL20
- Chain f
- 60S RIBOSOMAL PROTEIN EL33
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