IL_4D5Y_168

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGGAAGGU*ACAGCCC

Length

15 nucleotides

Bulged bases

4D5Y|1|2|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|G|731
4D5Y|1|2|G|732
4D5Y|1|2|G|733
4D5Y|1|2|A|734
4D5Y|1|2|A|735
4D5Y|1|2|G|736
4D5Y|1|2|G|737
4D5Y|1|2|U|738
*
4D5Y|1|2|A|899
4D5Y|1|2|C|900
4D5Y|1|2|A|901
4D5Y|1|2|G|902
4D5Y|1|2|C|903
4D5Y|1|2|C|904
4D5Y|1|2|C|905

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain M

60S RIBOSOMAL PROTEIN EL14

Chain S

60S RIBOSOMAL PROTEIN EL20