IL_4D5Y_169

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GG*UGUU

Length

6 nucleotides

Bulged bases

4D5Y|1|2|G|896, 4D5Y|1|2|U|897

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_169 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.2599

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4D5Y|1|2|G|739
4D5Y|1|2|G|740
*
4D5Y|1|2|U|895
4D5Y|1|2|G|896
4D5Y|1|2|U|897
4D5Y|1|2|U|898

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain S

60S RIBOSOMAL PROTEIN EL20