IL_4D5Y_177

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCGGUAAA*UUUAAAUGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|C|1710
4D5Y|1|2|C|1711
4D5Y|1|2|G|1712
4D5Y|1|2|G|1713
4D5Y|1|2|U|1714
4D5Y|1|2|A|1715
4D5Y|1|2|A|1716
4D5Y|1|2|A|1717
*
4D5Y|1|2|U|1769
4D5Y|1|2|U|1770
4D5Y|1|2|U|1771
4D5Y|1|2|A|1772
4D5Y|1|2|A|1773
4D5Y|1|2|A|1774
4D5Y|1|2|U|1775
4D5Y|1|2|G|1776
4D5Y|1|2|G|1777

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain D

60S RIBOSOMAL PROTEIN UL18

Chain F

60S RIBOSOMAL PROTEIN UL30

Chain I

60S RIBOSOMAL PROTEIN UL16

Chain T

60S RIBOSOMAL PROTEIN EL21