IL_4D5Y_181
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCGACG*CGUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_181 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3127
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4D5Y|1|2|C|1898
4D5Y|1|2|C|1899
4D5Y|1|2|G|1900
4D5Y|1|2|A|1901
4D5Y|1|2|C|1902
4D5Y|1|2|G|1903
*
4D5Y|1|2|C|2037
4D5Y|1|2|G|2038
4D5Y|1|2|U|2039
4D5Y|1|2|C|2040
4D5Y|1|2|G|2041
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain H
- 60S RIBOSOMAL PROTEIN UL6
- Chain M
- 60S RIBOSOMAL PROTEIN EL14
- Chain O
- 60S RIBOSOMAL PROTEIN UL13
- Chain S
- 60S RIBOSOMAL PROTEIN EL20
- Chain f
- 60S RIBOSOMAL PROTEIN EL33
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