IL_4D5Y_184

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGAAC*GAAC

Length

10 nucleotides

Bulged bases

4D5Y|1|2|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_184 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.2969

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4D5Y|1|2|G|2391
4D5Y|1|2|U|2392
4D5Y|1|2|G|2393
4D5Y|1|2|A|2394
4D5Y|1|2|A|2395
4D5Y|1|2|C|2396
*
4D5Y|1|2|G|2404
4D5Y|1|2|A|2405
4D5Y|1|2|A|2406
4D5Y|1|2|C|2407

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain P

60S RIBOSOMAL PROTEIN UL22

Chain R

60S RIBOSOMAL PROTEIN UL19

Chain l

60S RIBOSOMAL PROTEIN EL39