IL_4D5Y_190

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4D5Y|1|2|G|4143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_190 not in the Motif Atlas

Homologous match to IL_8P9A_323

Geometric discrepancy: 0.339

The information below is about IL_8P9A_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4D5Y|1|2|U|3896
4D5Y|1|2|A|3897
4D5Y|1|2|G|3898
*
4D5Y|1|2|U|4141
4D5Y|1|2|G|4142
4D5Y|1|2|G|4143
4D5Y|1|2|G|4144

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN UL2

Chain N

60S RIBOSOMAL PROTEIN EL15

Chain o

60S RIBOSOMAL PROTEIN EL44