IL_4D5Y_201
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGUG
- Length
- 21 nucleotides
- Bulged bases
- 4D5Y|1|2|U|4717, 4D5Y|1|2|C|4718, 4D5Y|1|2|G|4719, 4D5Y|1|2|G|4724, 4D5Y|1|2|G|4825, 4D5Y|1|2|C|4826, 4D5Y|1|2|A|4829, 4D5Y|1|2|U|4831
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|C|4715
4D5Y|1|2|C|4716
4D5Y|1|2|U|4717
4D5Y|1|2|C|4718
4D5Y|1|2|G|4719
4D5Y|1|2|G|4720
4D5Y|1|2|A|4721
4D5Y|1|2|U|4722
4D5Y|1|2|A|4723
4D5Y|1|2|G|4724
4D5Y|1|2|C|4725
*
4D5Y|1|2|G|4823
4D5Y|1|2|U|4824
4D5Y|1|2|G|4825
4D5Y|1|2|C|4826
4D5Y|1|2|G|4827
4D5Y|1|2|G|4828
4D5Y|1|2|A|4829
4D5Y|1|2|G|4830
4D5Y|1|2|U|4831
4D5Y|1|2|G|4832
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain H
- 60S RIBOSOMAL PROTEIN UL6
- Chain M
- 60S RIBOSOMAL PROTEIN EL14
- Chain O
- 60S RIBOSOMAL PROTEIN UL13
- Chain S
- 60S RIBOSOMAL PROTEIN EL20
- Chain f
- 60S RIBOSOMAL PROTEIN EL33
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