IL_4D61_018
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAU*AAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_018 not in the Motif Atlas
- Homologous match to IL_4V88_406
- Geometric discrepancy: 0.2456
- The information below is about IL_4V88_406
- Detailed Annotation
- Isolated near basepair
- Broad Annotation
- Isolated near basepair
- Motif group
- IL_76004.2
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 18
Unit IDs
4D61|1|1|C|459
4D61|1|1|A|460
4D61|1|1|U|461
*
4D61|1|1|A|468
4D61|1|1|A|469
4D61|1|1|G|470
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
Coloring options: