IL_4D61_034
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_034 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3646
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4D61|1|1|G|807
4D61|1|1|A|808
4D61|1|1|A|809
4D61|1|1|A|810
4D61|1|1|A|811
4D61|1|1|A|812
4D61|1|1|A|813
4D61|1|1|U|814
4D61|1|1|U|815
*
4D61|1|1|A|849
4D61|1|1|C|850
4D61|1|1|C|851
4D61|1|1|G|852
4D61|1|1|C|853
4D61|1|1|A|854
4D61|1|1|G|855
4D61|1|1|C|856
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
Coloring options: