IL_4D61_050
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGAAG*CUUU
- Length
- 9 nucleotides
- Bulged bases
- 4D61|1|1|G|1207
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_050 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2685
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4D61|1|1|G|1206
4D61|1|1|G|1207
4D61|1|1|A|1208
4D61|1|1|A|1209
4D61|1|1|G|1210
*
4D61|1|1|C|1689
4D61|1|1|U|1690
4D61|1|1|U|1691
4D61|1|1|U|1692
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN S2
- Chain a
- 40S RIBOSOMAL PROTEIN S26
- Chain c
- 40S RIBOSOMAL PROTEIN S28
- Chain j
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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