IL_4D61_058
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 4D61|1|1|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_058 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3451
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4D61|1|1|G|1328
4D61|1|1|U|1329
4D61|1|1|G|1330
4D61|1|1|C|1331
4D61|1|1|A|1332
4D61|1|1|U|1333
*
4D61|1|1|A|1498
4D61|1|1|U|1499
4D61|1|1|G|1500
4D61|1|1|C|1501
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN S3
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
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