IL_4D61_108

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUAU*AAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D61_108 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3909

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4D61|1|j|G|6175
4D61|1|j|U|6176
4D61|1|j|U|6177
4D61|1|j|A|6178
4D61|1|j|U|6179
*
4D61|1|j|A|6197
4D61|1|j|A|6198
4D61|1|j|A|6199
4D61|1|j|A|6200
4D61|1|j|C|6201

Current chains

Chain j

CRICKET PARALYSIS VIRUS IRES RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain S

40S RIBOSOMAL PROTEIN S18