IL_4D67_009

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAACU*GAGAGUUCAAGAGGGC

Length

21 nucleotides

Bulged bases

4D67|1|2|G|400, 4D67|1|2|G|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|378
4D67|1|2|A|379
4D67|1|2|A|380
4D67|1|2|C|381
4D67|1|2|U|382
*
4D67|1|2|G|390
4D67|1|2|A|391
4D67|1|2|G|392
4D67|1|2|A|393
4D67|1|2|G|394
4D67|1|2|U|395
4D67|1|2|U|396
4D67|1|2|C|397
4D67|1|2|A|398
4D67|1|2|A|399
4D67|1|2|G|400
4D67|1|2|A|401
4D67|1|2|G|402
4D67|1|2|G|403
4D67|1|2|G|404
4D67|1|2|C|405

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain P

60S RIBOSOMAL PROTEIN L17

Chain Y

60S RIBOSOMAL PROTEIN L26

Chain l

60S RIBOSOMAL PROTEIN L39