IL_4D67_014

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGGAUUCAACCC*GGGCGCAUUU

Length

22 nucleotides

Bulged bases

4D67|1|2|U|459, 4D67|1|2|C|460, 4D67|1|2|A|461, 4D67|1|2|A|678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|A|454
4D67|1|2|G|455
4D67|1|2|G|456
4D67|1|2|A|457
4D67|1|2|U|458
4D67|1|2|U|459
4D67|1|2|C|460
4D67|1|2|A|461
4D67|1|2|A|462
4D67|1|2|C|463
4D67|1|2|C|464
4D67|1|2|C|465
*
4D67|1|2|G|672
4D67|1|2|G|673
4D67|1|2|G|674
4D67|1|2|C|675
4D67|1|2|G|676
4D67|1|2|C|677
4D67|1|2|A|678
4D67|1|2|U|679
4D67|1|2|U|680
4D67|1|2|U|681

Current chains

Chain 2

28S RRNA

Nearby chains

Chain t

60S RIBOSOMAL PROTEIN L28