IL_4D67_023

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAAGGCC*GCAGCAGCAC

Length

18 nucleotides

Bulged bases

4D67|1|2|C|912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|718
4D67|1|2|G|719
4D67|1|2|A|720
4D67|1|2|A|721
4D67|1|2|G|722
4D67|1|2|G|723
4D67|1|2|C|724
4D67|1|2|C|725
*
4D67|1|2|G|911
4D67|1|2|C|912
4D67|1|2|A|913
4D67|1|2|G|914
4D67|1|2|C|915
4D67|1|2|A|916
4D67|1|2|G|917
4D67|1|2|C|918
4D67|1|2|A|919
4D67|1|2|C|920

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain F

60S RIBOSOMAL PROTEIN L7

Chain M

60S RIBOSOMAL PROTEIN L14

Chain S

60S RIBOSOMAL PROTEIN L18A