IL_4D67_036

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

4D67|1|2|C|1358, 4D67|1|2|C|1359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|1337
4D67|1|2|G|1338
4D67|1|2|G|1339
4D67|1|2|G|1340
4D67|1|2|G|1341
*
4D67|1|2|C|1356
4D67|1|2|G|1357
4D67|1|2|C|1358
4D67|1|2|C|1359
4D67|1|2|G|1360
4D67|1|2|U|1361
4D67|1|2|G|1362

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain L

60S RIBOSOMAL PROTEIN L13

Chain N

60S RIBOSOMAL PROTEIN L15

Chain a

60S RIBOSOMAL PROTEIN L27A