IL_4D67_058

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

4D67|1|2|G|1794

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_058 not in the Motif Atlas

Homologous match to IL_5TBW_045

Geometric discrepancy: 0.4787

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4D67|1|2|C|1793
4D67|1|2|G|1794
4D67|1|2|C|1795
*
4D67|1|2|G|1802
4D67|1|2|G|1803

Current chains

Chain 2

28S RRNA

Nearby chains

Chain D

60S RIBOSOMAL PROTEIN L5

Chain T

60S RIBOSOMAL PROTEIN L21

Chain b

60S RIBOSOMAL PROTEIN L29