3D structure

PDB id
4D67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
UGAG*CCG
Length
7 nucleotides
Bulged bases
4D67|1|2|A|2276
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4D67_068 not in the Motif Atlas
Geometric match to IL_5UNE_004
Geometric discrepancy: 0.1989
The information below is about IL_5UNE_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

4D67|1|2|U|2274
4D67|1|2|G|2275
4D67|1|2|A|2276
4D67|1|2|G|2277
*
4D67|1|2|C|2311
4D67|1|2|C|2312
4D67|1|2|G|2313

Current chains

Chain 2
28S RRNA

Nearby chains

Chain 3
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S RIBOSOMAL PROTEIN L4
Chain e
60S RIBOSOMAL PROTEIN L32
Chain t
60S RIBOSOMAL PROTEIN L28

Coloring options:


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