IL_4D67_083

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGGAAUGG*CCGAGAGA

Length

16 nucleotides

Bulged bases

4D67|1|2|A|2651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|U|2633
4D67|1|2|G|2634
4D67|1|2|G|2635
4D67|1|2|A|2636
4D67|1|2|A|2637
4D67|1|2|U|2638
4D67|1|2|G|2639
4D67|1|2|G|2640
*
4D67|1|2|C|2648
4D67|1|2|C|2649
4D67|1|2|G|2650
4D67|1|2|A|2651
4D67|1|2|G|2652
4D67|1|2|A|2653
4D67|1|2|G|2654
4D67|1|2|A|2655

Current chains

Chain 2

28S RRNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN L19

Chain Z

60S RIBOSOMAL PROTEIN L27

Chain c

60S RIBOSOMAL PROTEIN L30

Chain g

60S RIBOSOMAL PROTEIN L34

Chain p

60S RIBOSOMAL PROTEIN L37A