IL_4D67_090
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GG*CGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_090 not in the Motif Atlas
- Homologous match to IL_5TBW_080
- Geometric discrepancy: 0.2375
- The information below is about IL_5TBW_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74125.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4D67|1|2|G|2873
4D67|1|2|G|2874
*
4D67|1|2|C|3571
4D67|1|2|G|3572
4D67|1|2|A|3573
4D67|1|2|C|3574
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain R
- 60S RIBOSOMAL PROTEIN L19
Coloring options: