3D structure

PDB id
4D67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
GAA*UACC
Length
7 nucleotides
Bulged bases
4D67|1|2|A|3870, 4D67|1|2|C|4520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4D67_102 not in the Motif Atlas
Homologous match to IL_5TBW_092
Geometric discrepancy: 0.3327
The information below is about IL_5TBW_092
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_54678.7
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4D67|1|2|G|3869
4D67|1|2|A|3870
4D67|1|2|A|3871
*
4D67|1|2|U|4518
4D67|1|2|A|4519
4D67|1|2|C|4520
4D67|1|2|C|4521

Current chains

Chain 2
28S RRNA

Nearby chains

Chain B
60S RIBOSOMAL PROTEIN L3
Chain P
60S RIBOSOMAL PROTEIN L17

Coloring options:


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