IL_4D67_148

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

4D67|1|2|G|4996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|U|4958
4D67|1|2|C|4959
4D67|1|2|G|4960
4D67|1|2|U|4961
4D67|1|2|A|4962
4D67|1|2|C|4963
4D67|1|2|G|4964
*
4D67|1|2|U|4994
4D67|1|2|U|4995
4D67|1|2|G|4996
4D67|1|2|A|4997
4D67|1|2|A|4998
4D67|1|2|A|4999

Current chains

Chain 2

28S RRNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain W

60S RIBOSOMAL PROTEIN L24

Chain d

60S RIBOSOMAL PROTEIN L31